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GitHub - MouseLand/Kilosort: Fast spike sorting with drift …
https://github.com/MouseLand/Kilosort
WebWarning ‼️: There was a bug in Kilosort 2.5 and 3 (but not 1,2 and 4) which caused fewer spikes to be detected in ~7ms periods at batch boundaries (every 2.1866s, issue #594). The patch0 releases fix this bug. It is also advised not to manually change the batch size in any Matlab-version of Kilosort (1-3).
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Solving the spike sorting problem with Kilosort - mouseland.github.io
https://mouseland.github.io/research/posts/kilosort.html
WebThis paper describes the various algorithmic steps introduced in different versions of Kilosort. We also report the development of Kilosort4, a new version with substantially improved performance due to new clustering algorithms …
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Releases · MouseLand/Kilosort · GitHub
https://github.com/MouseLand/Kilosort/releases
WebKilosort 3.0. UPDATE 3/8/24: this version has the "spike holes" bug from issue #594 and is only left here as a reference. Please use the new release above "Kilosort 3.0 patch0" where the main bug has been fixed. We will continue to investigate if other bugs are left that produce this behavior.
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MouseLand/Kilosort: Fast spike sorting with drift correction for up …
https://gitmemories.com/MouseLand/Kilosort
WebKilosort 2.5 on Jan 30, 2021. Kilosort 2.0 on Oct 28, 2020. Welcome to Kilosort3, a MATLAB package for spike sorting electrophysiological data up to 1024 channels. In many cases, and especially for Neuropixels probes, the automated output of Kilosort3 requires minimal manual curation.
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Kilosort/README.md at main · MouseLand/Kilosort · GitHub
https://github.com/MouseLand/Kilosort/blob/main/README.md
WebFast spike sorting with drift correction for up to a thousand channels - Kilosort/README.md at main · MouseLand/Kilosort
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2. How it all works - MouseLand/Kilosort GitHub Wiki
https://github-wiki-see.page/m/MouseLand/Kilosort/wiki/2.-How-it-all-works
WebKilosort2 tracks waveforms as they change as a function of time, or as a function of drift. Because changes as a function of time are mostly due to probe drift, it is advantageous to "re-order time" so that Kilosort2 can traverse the …
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8. Hardware guide - MouseLand/Kilosort GitHub Wiki
https://github-wiki-see.page/m/MouseLand/Kilosort/wiki/8.-Hardware-guide
WebHardware guide - MouseLand/Kilosort GitHub Wiki. updated March, 2024* We start with a list of recommendations for a standard Neuropixels recording (384 channels, <3 hours), and then we continue with a list of modifications depending on how your recordings differ from this standard one.
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3. More on drift correction - MouseLand/Kilosort GitHub Wiki
https://github-wiki-see.page/m/MouseLand/Kilosort/wiki/3.-More-on-drift-correction
WebMore on drift correction - MouseLand/Kilosort GitHub Wiki Here we get into the details of drift: why it happens, what it looks like, how you can characterize it for your own recordings, and how you can tell if Kilosort2 is fixing it.
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Code & data - mouseland.github.io
https://mouseland.github.io/code_and_data.html
WebKilosort is the most popular spike sorting tool for Neuropixels probes, and also works on other probes. The software is GPU-accelerated to enable fast and accurate spike sorting. Kilosort first detects spikes, then uses these spikes to perform drift correction – an important step in most recording setups.
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Kilosort/README.md at main · MouseLand/Kilosort
https://hub.hctrah.com/MouseLand/Kilosort/blob/main/README.md
WebFast spike sorting with drift correction for up to a thousand channels - Kilosort/README.md at main · MouseLand/Kilosort
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