Keyword Analysis & Research: busparse
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BUSpaRse
https://github.com/BUStools/BUSpaRse
R package to process BUS files
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Bioconductor - BUSpaRse
https://bioconductor.org/packages/release/bioc/html/BUSpaRse.html
WEBBUSpaRse. kallisto | bustools R utilities. DOI: 10.18129/B9.bioc.BUSpaRse. Bioconductor version: Release (3.18) The kallisto | bustools pipeline is a fast and modular set of tools … biocViews: RNASeq, SingleCell, Software, WorkflowStep License: BSD_2_clause + file LICENSE In Bioconductor since: BioC 3.10 (R-3.6) (4.5 years) Version: 1.16.1
biocViews: RNASeq, SingleCell, Software, WorkflowStep
License: BSD_2_clause + file LICENSE
In Bioconductor since: BioC 3.10 (R-3.6) (4.5 years)
Version: 1.16.1
DA: 22 PA: 19 MOZ Rank: 24
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GitHub - BUStools/BUSpaRse: R package to process BUS files
https://github.com/BUStools/BUSpaRse
WEBBUSpaRse. This package processes bus files generated from single-cell RNA-seq FASTQ files, e.g. using kallisto. The bus format is a table with 4 columns: B arcode, U MI, S et, …
DA: 74 PA: 64 MOZ Rank: 36
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BUSpaRse: kallisto | bustools R utilities - Bioconductor
https://bioconductor.org/packages/release/bioc/manuals/BUSpaRse/man/BUSpaRse.pdf
WEB2024-02-27. The kallisto | bustools pipeline is a fast and modular set of tools to convert single cell RNA-seq reads in fastq files into gene count or transcript compatibility counts …
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BUSpaRse: kallisto | bustools R utilities - R Package Documentation
https://rdrr.io/bioc/BUSpaRse/
WEBMar 3, 2021 · BUSpaRse documentation built on March 3, 2021, 2:01 a.m. The kallisto | bustools pipeline is a fast and modular set of tools to convert single cell RNA-seq reads … Bioconductor views: RNASeq SingleCell WorkflowStep Maintainer: Lambda Moses <[email protected]> License: BSD_2_clause + file LICENSE Version: 1.4.2
Bioconductor views: RNASeq SingleCell WorkflowStep
Maintainer: Lambda Moses <[email protected]>
License: BSD_2_clause + file LICENSE
Version: 1.4.2
DA: 53 PA: 12 MOZ Rank: 30
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BUSpaRse: README.md - R Package Documentation
https://rdrr.io/bioc/BUSpaRse/f/README.md
WEBMar 3, 2021 · BUSpaRse. This package processes bus files generated from single-cell RNA-seq FASTQ files, e.g. using kallisto. The bus format is a table with 4 columns: B …
DA: 99 PA: 19 MOZ Rank: 34
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Package Recipe 'bioconductor-busparse' — Bioconda …
https://bioconda.github.io/recipes/bioconductor-busparse/README.html
WEBThis package serves the following purposes: First, this package allows users to manipulate BUS format files as data frames in R and then convert them into gene count or TCC …
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1k PBMCs from a Healthy Donor (10x v3 chemistry)
https://bustools.github.io/BUS_notebooks_R/10xv3.html
WEBFeb 7, 2020 · The most recent version of bustools can generate gene count matrices from bus files more efficiently; the purpose of the separate implementation in BUSpaRse is for advanced users to experiment with …
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kallisto | bustools R notebooks - GitHub Pages
https://bustools.github.io/BUS_notebooks_R/index.html
WEB47 rows · This repository has example notebooks that demonstrate usage of kallisto bus to generate gene count or transcript compatibility count (TCC) matrices from FASTQ files followed by downstream analyses. To …
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