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The SerialEM Home Page - University of Colorado Boulder
https://bio3d.colorado.edu/SerialEM/
WEBSerialEM is a program that can acquire a variety of data from electron microscopes: tilt series for electron tomography, large image areas for 3-D reconstruction from serial sections, and images for reconstruction of macromolecules by single-particle methods. The main focus of the program is automated tilt series acquisition.
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SerialEM Downloads and Installation - University of Colorado …
https://bio3d.colorado.edu/SerialEM/download.html
WEBThe SerialEM executable is open source under an MIT license, but the microscope and camera plugins to SerialEM are not open source. The University of Colorado retains various rights with regard to these components; however, they are currently provided free for both commercial and non-commercial purposes. By downloading the distributed software ...
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Software tools for automated transmission electron microscopy
https://www.nature.com/articles/s41592-019-0396-9
WEBMay 13, 2019 · SerialEM. SerialEM 19 is a versatile software for TEM data collection, originally intended mainly for electron tomography acquisition. While its core has been made available as open-source ...
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Setting Up SerialEM - University of Colorado Boulder
https://bio3d.colorado.edu/SerialEM/hlp/html/setting_up_serialem.htm
WEBFinal Tasks (Priority 1) When you are finished setting things up, check the settings in the system (default) settings file. Run 'Open' in the Settings menu and load the file SEMsystemSettings.txt from the C:\ProgramData\SerialEM or C:\Program Files\SerialEM folder. Check each of the camera parameter sets.
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Nexperion - SerialEM
https://www.nexperion.net/serialem
WEBSerialEM is compatible with devices from major manufacturers such as Thermo Scientific/ FEI Tecnai, Titan, and Talos microscopes with the TEM scripting adapter, JEOL TEMs with the TEMCON or TEMCENTER interface, the Hitachi HT7700 / 7800, and cameras/detectors from all major brands.
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SerialEM Introduction Lecture Part 1 - YouTube
https://www.youtube.com/watch?v=IAQDH-9CpDw
WEBThis video is Part 1 of the introduction to SerialEM including: a visual tour, image buffers, image display panel, microscope status panel, camera and macro tools panel, and camera parameter...
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SerialEM Training - Basic, Tomography, Single Particle, Advanced
https://sphinx-emdocs.readthedocs.io/en/latest/serialem_training.html
WEBAug 12, 2016 · Introduction to SerialEM, launch and exit the program. Explain system files and user setting file. Explain how SerialEM controls microscope and camera, and its relationship with microscope and camera control software interfaces. Explain SerialEM interface and layout - control panels and menus.
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SerialEM Instructions by Mode - Brandeis University
https://www.brandeis.edu/science/resources/electron-microscope/documentation/serial-em-instructions-wa.pdf
WEBSerialEM Instructions by Mode. This document provides protocols and guidance for using SerialEM for the following: SPA cryo imaging. Negative staining imaging. Tomography. Miscellaneous.
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SerialEM Note: Installation and Calibration - Read the Docs
https://sphinx-emdocs.readthedocs.io/en/latest/serialEM-note-install-and-calib.html
WEBNov 12, 2017 · The helpfile from SerialEM is very complete to provide almost all information needed, but it is perhasp a lot to read and not clear where to start for a beginner. I wanted to list some steps here to guide you through this initial installation and calibration phase. It is like a crash list.
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Automated electron microscope tomography using robust prediction …
https://www.sciencedirect.com/science/article/pii/S1047847705001528
WEBOct 1, 2005 · This method allows a tilt series to be acquired rapidly when conditions are good but falls back toward the traditional approach of taking focusing and tracking images when necessary. The method has been implemented in a program, SerialEM, that provides an efficient environment for data acquisition.
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